Have you seen Kumirei’s Yomichan add-ons that add WK level/JLPT tags to Yomichan lookups? It took me a bit to find that info for kanji, but if you click on a kanji in a word in Yomichan and scroll down, it’ll tell you its WK level if it’s on here. WK has made some additions and such since then, so the add-on isn’t perfectly reliable, but I’ve gotten excellent use out of it so far.
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