It takes a while to get used to how kanji come together to form vocab, especially learning how to predict it. There’s no English equivalent, so it’s a completely new skill. Vocab absolutely stressed me out for a while. The nice part is, you don’t actually need to Guru vocab to level up.
Still work with them of course, if you don’t guru them consistently eventually it’ll just give you way more daily reviews, but it’s not like Kanji where if none of them are sticking you can’t proceed. Just keep working at it and it’ll be second nature before you know it. Eventually it even becomes easier to tell when things are going to rendaku and predict when exceptions will happen. Half of learning is learning how to learn.
(Also there are a lot of exceptional vocab readings in the first few levels, probably because they’re a lot of very common kanji. If they’re tripping you up feel free to study them outside of WK. There are gonna be exceptions in vocab every level, but they seem to be everywhere in the first 3 or 4. Don’t worry if your accuracy isn’t as high as you’d like it.)